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ecs 129 Forewords Introduction Nucleic Acids Proteins: Amino Acids Proteins: Secondary and Tertiary Structures Sequence Comparison Lecture Notes Summary Supporting Papers Quiz Protein Structure Classification RNA Structure Prediction Protein Structure Prediction Protein Protein Interaction Docking Databases Review Quick links pakoehl@ucdavis.edu

Patrice Koehl's teaching web site > ecs 129 > Sequence Comparison > Supporting Papers Personal tools Log in Supporting Papers   References The estimation of statistical parameters for local alignment score distributions Stephen F. Altschul*, Ralf Bundschuh1, Rolf Olsen1 and Terence Hwa1,Nucleic Acids Research, 2001, Vol. 29, No. 2 351–361 , 2001 Amino Acid Substitution Matrices from Protein Blocks S Henikoff, and JG Henikoff, PNAS 1992;89;10915-10919, 1992 An overview of Sequence Alignment Eugene W. Myers, 1991 A Model of Evolutionary Change in Proteins M.O. Dayhoff, R.M. Schwartz, and B.C, Orcutt, 1978 A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins Needleman and Wunsch, J. Mol. Bwl. (1970)48, 443-453, 1970

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