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Patrice KOEHL (December 2004)

TITLES AND DEGREES:

1995

Habilitation à diriger les recherches, Université Louis Pasteur, Strasbourg.

1989

PhD in Biophysics (Molecular Biology and NMR spectroscopy), Louis Pasteur University, Strasbourg.

1984

Diplôme d'ingénieur de l'Ecole Centrale des Arts et Manufactures de Paris.

(Equivalent to M.S. in Engineering); Major: Bioengineering.


AWARDS AND FELLOWSHIPS:

1997-1998

International Union against Cancer (UICC) senior long term fellowship

for support of a sabbatical in Prof. Michael Levitt's laboratory

at Stanford, California.

1997

Bronze Medal from the Centre National de la Recherche Scientifique (CNRS),

France (Young Investigator Award).

1991

Human Frontiers Science Program Organization (HSFPO) fellowship for support

of a collaboration with Prof. Nobuhiro Go, University of Kyoto, Japan.

1990

International Union Against Cancer (UICC) junior fellowship for support of a collaboration

with Prof. Jardetzky, Stanford University, California.

1986-1989

CNRS Doctoral Fellowship (France); PhD thesis under the supervision of

Prof. J.F. Lefevre, Strasbourg University, France.

1984-1985

French Government, Ministry of Foreign Affairs Pre-doctoral fellowship.


EMPLOYMENT AND RESEARCH EXPERIENCE

Since 2004

Associate Professor, Department of Computer Science and Genome Center, University of California, Davis.

2001-2004

Senior Research Associate in the Department of Structural Biology, Stanford University.

Research project: A new computational method for protein design.

1998-2001

Senior Visiting Research Associate in the Department of Structural Biology, Stanford University.

Research project: A new computational method for protein design.

1997-1998

Visiting scholar in the Department of Structural Biology, Stanford University.

Research project: A structure-dependent substitution matrix for the protein threading problem.

Since 1989

Tenured CNRS Staff Scientist Grade 1, Nuclear Magnetic Resonance Laboratory, Strasbourg

Research project: Development of a strategy for structure determination by NMR,

and development of theoretical models for the protein folding and the inverse folding problems.

Summer 1991

Visiting Scientist at the Molecular Modeling Laboratory of the University of Kyoto, Japan

Research project: Normal mode analysis of nuclear magnetic resonance data on proteins.

Summer 1990

Visiting Scientist at the Stanford Magnetic Resonance Laboratory of the University of Stanford, California.

Research project: Development of FILMAN, a new program for refining protein structures

from Nuclear Magnetic Resonance data.

1986-1989

Doctoral Research at the University Louis Pasteur of Strasbourg

in the Molecular and Structural Carcinogenesis and Mutagenesis Group

directed by Dr. R.P.P Fuchs.

Supervisor: Prof. Jean-Francois Lefevre; Defense: April 11, 1989

Title: Molecular and structural studies of a hot-spot for acetylaminofluorene

mutagenesis and a strategy for structure determination by NMR.

1984-1986

Staff Scientist at the Lawrence Berkeley Laboratory, Berkeley, California,

in the Biophysics Laboratory directed by Dr. A. Chatterjee.

Research project: Interaction of ionizing heavy charged particles with dilute DNA solutions.


TEACHING EXPERIENCE

1994-1997

Lecturer, The Fourier transform and its applications,

Université Louis Pasteur, Strasbourg, Physics department, graduate level.

1992-1997

Lecturer, Distance Geometry and protein structure,

Université Louis Pasteur, Strasbourg, Biophysics department, graduate level.

1988-1994

Lecturer, Introduction to computer programming for biologists,

Ecole Superieure de Biotechnologie de Strasbourg, undergraduate level.

1989-1991

Lecturer, Calculus,

Ecole Superieure de Biotechnologie de Strasbourg, undergraduate level.

1989

Lecturer, Mathematics for Biology,

Universite Louis Pasteur, Strasbourg, Biology Department, undergraduate level.


REVIEWING AND EDITING

Reviewer:

Journal of Molecular Biology, Journal of Computational Biology, Journal of Magnetic Resonance,
Journal of Biological NMR, Journal de Chimie Physique, Nucleic Acids Research.

Editor:

Co-editor of section Theory and Simulation in Current Opinion in Structural Biology.


INTERESTS

Traveling, reading, writing, hiking, running, swimming, coaching soccer.